Please wait a minute...

大连海洋大学学报  2018, Vol. 33 Issue (4): 460-466    DOI: 10.16535/j.cnki.dlhyxb.2018.04.007
  |
基于AFLP标记研究长江靖江段日本鳗鲡群体遗传多样性
杨彦平,徐东坡,方弟安,刘凯
中国水产科学研究院淡水渔业研究中心,江苏 无锡
Analysis of genetic diversity of Japanese eel Anguilla japonica from Jingjiang section of the Yangtze River through AFLP
YANG Yan-ping, XU Dong-po, FANG Di-an, LIU Kai
Freshwater Fisheries Research Center, Chinese Academy of Fishery Sciences, Wuxi 214081, China
下载:  HTML  PDF (672KB) 
输出:  BibTeX | EndNote (RIS)      
摘要 为探索长江靖江段日本鳗鲡Anguilla?japonica种群遗传结构,通过AFLP分子标记技术首次对靖江71尾日本鳗鲡的种群遗传多样性结构进行研究,筛选了9对选择性扩增引物对不同月份、不同规格的日本鳗鲡样本进行分子标记。结果表明:筛选的9对选择性扩增引物共获得216个多态位点,比例最高为98.15%,最低为91.20%,日本鳗鲡不同月份间的多态位点比例平均为95.06%,Nei’s基因多样性指数平均为0.277 2,Shannon多样性指数平均为0.433 2;小规格组A组(体长<400 mm)有效等位基因数、Nei’s基因多样性指数和Shannon多样性指数均高于大规格组B组(体≥400 mm)。采用AMOVA分析组间和个体间的变异成分组成,以确定该江段日本鳗鲡的遗传结构变异来源,结果显示,本研究中80%以上的变异主要来源于个体间。研究表明,靖江段日本鳗鲡群体遗传多样性水平较高,群体间的分化程度相对较弱,个体间存在基因交流。
服务
把本文推荐给朋友
加入引用管理器
E-mail Alert
RSS
作者相关文章
杨彦平
徐东坡
方弟安
刘凯
关键词:  日本鳗鲡  种群遗传结构  遗传距离  AMOVA  分子标记    
Abstract: The genetic diversity was firstly investigated in 71 samples of Japanese eel Anguilla japonica collected in Jingjiang section of the Yangtze River by AFLP, and then nine pairs of selective amplification primers were chosen and used to analyze the polymorphic site, parameters of genetic diversity, parameters of gene differentiation and the dendrogram through Popgene and Ntsys software, with good separation in nine groups based on captured time and two groups on body length, respectively. Results showed that a total of 216 polymorphic sites were detected through the nine pairs of selective amplification primer, with an average polymorphic site of 24 each pair primer, the maximum percent polymorphic site of 98.15%, the minimum one of 91.20%, and mean percent polymorphic site of 95.06% in the nine groups from E-ACC/M-CAA. Correspondingly, from E-ACC/M-CTG, the maximum was observed 100% in July, August and September, while, the minimum 93.06% in March and May. Simultaneously, there was the mean Nei value of 0.277 2 and Shannon index of 0.433 2 in the nine groups, the maximum in July, and the minimum in September and November. There were higher effective number of alleles, Nei’s index and Shannon index in group A (body length>400 mm) than those in group B (body length<400 mm). AMOVA revealed that more than 80% of variation was derived from individuals both in nine groups and body length groups (A and B). The findings indicated that the Japanese eel had high level of genetic diversity, which was probably benefited from the primerly geographic position and migratory habit. Concurrently, two prominent branches in dendrogram suggested that not all individuals came from the same parent, and the differentiation level and gene flow was still existed in these samples.
Key words:  Anguilla japonica    population genetic structure    genetic distance    AMOVA    molecular marker
               出版日期:  2018-08-15      发布日期:  2018-08-15      期的出版日期:  2018-08-15
中图分类号:  Q346.5  
引用本文:    
杨彦平, 徐东坡, 方弟安, 刘凯. 基于AFLP标记研究长江靖江段日本鳗鲡群体遗传多样性[J]. 大连海洋大学学报, 2018, 33(4): 460-466.
YANG Yan-ping, XU Dong-po, FANG Di-an, LIU Kai. Analysis of genetic diversity of Japanese eel Anguilla japonica from Jingjiang section of the Yangtze River through AFLP. Journal of Dalian Ocean University, 2018, 33(4): 460-466.
链接本文:  
https://xuebao.dlou.edu.cn/CN/10.16535/j.cnki.dlhyxb.2018.04.007  或          https://xuebao.dlou.edu.cn/CN/Y2018/V33/I4/460
[1] 隋宥珍, 刘连为, 徐开达, 周永东. 基于线粒体Cytb基因的口虾蛄种群遗传结构研究[J]. 大连海洋大学学报, 2019, 34(3): 355-361.
[2] 刘永新, 刘奕, 周勤, 张红涛. 利用微卫星标记指导红鳍东方鲀亲本选配[J]. 大连海洋大学学报, 2015, 30(2): 113-119.
[3] 郑真真, 许强华, 戴小杰, 朱江峰. 基于线粒体控制区部分序列的大青鲨种群遗传结构研究[J]. 大连海洋大学学报, 2014, 29(5): 463-468.
[4] 田盛君, 李晓东, 姜玉声, 刘胥, 杨红威, 原振政, 郑岩. “光合1号”中华绒螯蟹微卫星富集文库的构建与多态性标记的筛选[J]. 大连海洋大学学报, 2013, 28(3): 230-235.
[5] 刘明泰, 李杨, 刘小林, 许淑芬, 常亚青. 皱纹盘鲍SRAP反应体系的正交优化[J]. 大连海洋大学学报, 2013, 28(1): 12-16.
[6] 唐丽花, 王广军, 余德光, 谢骏. 几种氨基酸对日本鳗鲡摄食、消化和生长的影响[J]. 大连海洋大学学报, 2009, 24(6): 574-577.
[7] 程起群, 马春艳, 缪炯, 陆星, 沙珍霞. 基于线粒体12SrRNA序列研究凤鲚两个野生群体的遗传多样性[J]. 大连海洋大学学报, 2007, 22(5): 387-391.
[8] 高俊生, 孙效文, 梁利群. 鲤抗寒性状的RAPD标记转化为SCAR标记的研究[J]. 大连海洋大学学报, 2007, 22(3): 194-197.
[9] 王斌, 毛连菊, 赵聆, 王立坤, 赵文. 对4个不同地理种群褶皱臂尾轮虫遗传多样性的RAPD分析[J]. 大连海洋大学学报, 2006, 21(1): 19-23.
[10] 杜诚, 卢迈新, 叶星, 劳海华, 黄樟翰, 白俊杰. 5个罗非鱼群体的遗传分析与分子标记[J]. 大连海洋大学学报, 2005, 20(1): 25-28.
[11] 陈清华, 肖调义, 刘臻. AFLP技术在水产动物研究中的应用[J]. 大连海洋大学学报, 2005, 20(1): 69-72.
[12] 邓岳松, 林浩然, 谢骏, 许梓荣. 埋植雄烯二酮包膜型药条诱导雌性日本鳗鲡性腺发育成熟的研究[J]. 大连海洋大学学报, 2001, 16(3): 163-167.
No Suggested Reading articles found!
Viewed
Full text


Abstract

Cited

  Shared   
  Discussed